VEP run statistics
VEP version (API) | 93 (93) |
Annotation sources | Cache: /opt/vep_cache/homo_sapiens/93_GRCh38 |
Species | homo_sapiens |
Command line options | --assembly GRCh38 --cache --coding_only --dir_cache /opt/vep_cache --dir_plugins /opt/vep_cache/Plugins --everything --fasta /opt/vep_cache/homo_sapiens/93_GRCh38/Homo_sapiens.GRCh38.dna.toplevel.fa.gz --force_overwrite --fork 8 --input_file /workspace/germline/WGS_Norm_HC_calls.filtered.PASS.vcf --offline --output_file /workspace/germline/WGS_Norm_HC_calls.filtered.PASS.vep.tsv --pick --plugin Downstream --tab --terms SO --transcript_version |
Start time | 2018-10-29 22:09:28 |
End time | 2018-10-29 22:10:18 |
Run time | 50 seconds |
Input file | /workspace/germline/WGS_Norm_HC_calls.filtered.PASS.vcf |
Output file | /workspace/germline/WGS_Norm_HC_calls.filtered.PASS.vep.tsv |
General statistics
Lines of input read | 123092 |
Variants processed | 123092 |
Variants filtered out | 0 |
Novel / existing variants | 2621 (2.1) / 120471 (97.9) |
Overlapped genes | 578 |
Overlapped transcripts | 651 |
Overlapped regulatory features | 0 |