VEP run statistics
| VEP version (API) | 93 (93) |
| Annotation sources | Cache: /opt/vep_cache/homo_sapiens/93_GRCh38 |
| Species | homo_sapiens |
| Command line options | --assembly GRCh38 --cache --coding_only --dir_cache /opt/vep_cache --dir_plugins /opt/vep_cache/Plugins --everything --fasta /opt/vep_cache/homo_sapiens/93_GRCh38/Homo_sapiens.GRCh38.dna.toplevel.fa.gz --force_overwrite --fork 8 --input_file /workspace/germline/WGS_Norm_HC_calls.filtered.PASS.vcf --offline --output_file /workspace/germline/WGS_Norm_HC_calls.filtered.PASS.vep.vcf --pick --plugin Downstream --terms SO --transcript_version --vcf |
| Start time | 2018-10-29 22:08:36 |
| End time | 2018-10-29 22:09:26 |
| Run time | 50 seconds |
| Input file | /workspace/germline/WGS_Norm_HC_calls.filtered.PASS.vcf |
| Output file | /workspace/germline/WGS_Norm_HC_calls.filtered.PASS.vep.vcf |
General statistics
| Lines of input read | 123092 |
| Variants processed | 123092 |
| Variants filtered out | 0 |
| Novel / existing variants | 2621 (2.1) / 120471 (97.9) |
| Overlapped genes | 578 |
| Overlapped transcripts | 651 |
| Overlapped regulatory features | 0 |